Docking Programs

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Brief Description

ArgusLab ArgusDock is a part of ArgusLab : the new drug docking code.  Contains both the GADock and ArgusDock docking engines and the AScore scoring function with a preliminary set of parameters.
AutoDockTools AutoDock Tools is a graphical front end written in python. It works great under linux and can automate most of the autodock processes. It's freely available.  
EscherNG ESCHER Next Generation (NG) is an enhanced version of the original ESCHER protein-protein automatic docking system developed in 1997 by  Gabriele Ausiello, Gianni Cesareni and Manuela Helmer Citterich.
Glide A complete solution for ligand-receptor docking.  Distributed by Schrodinger.
GOLD GOLD is a program for calculating the docking modes of small molecules into protein binding sites.
PDB2PQR PDB2PQR is a Python software package that automates many of the common tasks of preparing structures for continuum electrostatics calculations, providing a platform-independent utility for converting protein files in PDB format to PQR format.